| 1. Main Title | not rated | 3:08 |
| 2. Surprise on Ceti Alpha V | not rated | 0:46 |
| 3. Khan's Pets | not rated | 4:20 |
| 4. The Eels of Ceti Alpha V / Kirk in Space Shuttle | not rated | 3:54 |
| 5. Enterprise Clears Moorings | not rated | 3:34 |
| 6. Chekov Lies | not rated | 0:42 |
| 7. Spock | not rated | 1:13 |
| 8. Kirk Takes Command / He Tasks Me | not rated | 2:08 |
| 9. Craig Huxley, Craig Huxley - Genesis Project | not rated | 3:17 |
| 10. Surprise Attack | not rated | 5:08 |
| 11. Kirk's Explosive Reply | not rated | 4:03 |
| 12. Inside Regula I | not rated | 1:37 |
| 13. Brainwashed | not rated | 1:25 |
| 14. Captain Terrell's Death | not rated | 2:00 |
| 15. Buried Alive | not rated | 0:58 |
| 16. The Genesis Cave | not rated | 1:11 |
| 17. Battle in the Mutara Nebula | not rated | 8:09 |
| 18. Enterprise Attacks Reliant | not rated | 1:30 |
| 19. Genesis Countdown | not rated | 6:35 |
| 20. Spock (Dies) | not rated | 1:55 |
| 21. Amazing Grace | not rated | 1:27 |
| 22. Epilogue / End Title | not rated | 8:47 |
| 23. BONUS: Epilogue (original version) / End Title | not rated | 7:29 |
| 1:15:28 |
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