| CD1 |
| 1. Prologue | not rated | 4:34 |
| 2. Opening | not rated | 4:04 |
| 3. Battle | not rated | 3:01 |
| 4. Battle's Conclusion | not rated | 0:44 |
| 5. Starting Test | not rated | 2:21 |
| 6. Memories | not rated | 3:16 |
| 7. Gnosis | not rated | 4:24 |
| 8. Awakening | not rated | 2:25 |
| 9. Shion's Crisis | not rated | 1:56 |
| 10. Fighting KOS-MOS | not rated | 3:17 |
| 11. Sadness | not rated | 3:46 |
| 12. Life Or Death | not rated | 3:17 |
| 13. Game Over | not rated | 0:44 |
| 14. Margulis | not rated | 4:27 |
| 15. Ship Pursuit | not rated | 3:35 |
| 16. Relief | not rated | 2:45 |
| 17. Everyday | not rated | 1:57 |
| 18. U.M.N. Mode | not rated | 2:41 |
| 19. Durandal | not rated | 2:34 |
| 20. Invading The Enemy Warship | not rated | 0:42 |
| 21. U-TIC Council | not rated | 2:48 |
| 22. Girl Who Closed Her Heart | not rated | 2:15 |
| 23. Kookai Foundation | not rated | 1:57 |
| 24. Shion - Memories of The Past | not rated | 1:13 |
| 25. Pain (Instrumental) | not rated | 5:37 |
| 1:10:20 |
| CD2 |
| 1. Ormus | not rated | 2:29 |
| 2. Nephilim | not rated | 2:33 |
| 3. Warmth | not rated | 1:45 |
| 4. Suspense | not rated | 4:10 |
| 5. The Resurrection | not rated | 1:56 |
| 6. Shore of Nothingness | not rated | 2:30 |
| 7. Green Sleeves | not rated | 2:28 |
| 8. Zarathustra | not rated | 3:09 |
| 9. KOS-MOS | not rated | 2:29 |
| 10. Panic | not rated | 2:23 |
| 11. Song of The Nephilim | not rated | 1:06 |
| 12. The Miracle | not rated | 1:54 |
| 13. Inner Space | not rated | 1:50 |
| 14. Albedo | not rated | 3:47 |
| 15. Omega | not rated | 4:09 |
| 16. Proto Merkabah | not rated | 5:27 |
| 17. Last Battle | not rated | 5:08 |
| 18. Pain | not rated | 5:38 |
| 19. Escape | not rated | 2:32 |
| 20. Kokoro | not rated | 5:38 |
| 21. Shion - Emotion | not rated | 1:21 |
| 22. Kokoro (Piano Version) | not rated | 1:25 |
| 23. Kokoro (Instrumental) | not rated | 5:37 |
| 1:11:24 |
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