| 1. Main Title - Godzilla 2000: Millennium (M1) | not rated | 3:48 |
| 2. The Giant Tail (M2) | not rated | 0:29 |
| 3. Facing Fear (M3) | not rated | 1:10 |
| 4. A Close Call (M4) | not rated | 0:50 |
| 5. Godzilla Appears In Nemuro (M5) | not rated | 3:29 |
| 6. In The Ocean Depths (M6) | not rated | 1:54 |
| 7. A Sleep of 60 Million Years (M7) | not rated | 1:57 |
| 8. The Object From Outer Space: Unusual Phenomenon 1 (M9) | not rated | 1:04 |
| 9. The Self Defense Force Mobilizes (M10) | not rated | 1:42 |
| 10. Godzilla's Theme 2000: Millennium (M34/M11) | not rated | 2:06 |
| 11. End Title - The Feared God: Godzilla (M39B) | not rated | 0:33 |
| 12. Full Metal Missile (M12A-A + M12A-B + M12A-C + M12A-D) | not rated | 0:24 |
| 13. Full Metal Missile Fire (M12B) | not rated | 0:59 |
| 14. The Object From Outer Space: Flight (M13) | not rated | 0:52 |
| 15. Godzilla Lands (M14) | not rated | 0:34 |
| 16. Encounter With The Mysterious Object (M15) | not rated | 2:23 |
| 17. Eerie Silence 1 (M16) | not rated | 2:14 |
| 18. Eerie Silence 2 (M17) | not rated | 0:18 |
| 19. Ominous Premonition (M8/M18) | not rated | 1:50 |
| 20. The Wonder of G Revealed (M20) | not rated | 2:00 |
| 21. The Object From Outer Space: Unusual Phenomenon 2 (M21) | not rated | 1:32 |
| 22. The Flight of The Giant UFO 1 (M22) | not rated | 1:55 |
| 23. The Flight of The Giant UFO 2 (M23) | not rated | 1:02 |
| 24. To Shinjuku (M24) | not rated | 0:29 |
| 25. The Earth Invasion (M25B) | not rated | 2:20 |
| 26. Before The Explosion (M26) | not rated | 3:02 |
| 27. Millennium (M29) | not rated | 0:20 |
| 28. Thinking of Dad (M30A) | not rated | 0:48 |
| 29. 21:10 (M30C) | not rated | 0:48 |
| 30. Millennial Kingdom (M31) | not rated | 2:05 |
| 31. Miraculous Survival (M32) | not rated | 0:47 |
| 32. Organizer - "Godzilla's Theme" (M33 + M33A) | not rated | 2:58 |
| 33. Extraterrestrial Life: The Birth (M34) | not rated | 2:14 |
| 34. Rising Tension (M12A-D) | not rated | 0:09 |
| 35. Extraterrestrial Life: The Metamorphosis / The Object From Outer Space: Unusual Phenomenon 2 (M36 Top + End) | not rated | 2:30 |
| 36. Astonishing Resurrection (M11) | not rated | 1:42 |
| 37. Millennial Kingdom / The Object From Outer Space: Unusual Phenomenon 1 (M31 + M37A) | not rated | 1:15 |
| 38. G's Decision (M37B) | not rated | 0:47 |
| 39. The Space Monster: Ironic Fate (M38) | not rated | 1:00 |
| 40. End Title - The Feared God: Godzilla (M39A) | not rated | 1:14 |
| 41. End Title - The Feared God: Godzilla (M39C + M21) | not rated | 3:17 |
| 42. Facing Fear (M3) (Bonus Track) | not rated | 0:12 |
| 43. Main Title - Godzilla 2000: Millennium (M1) (Bonus Track) | not rated | 0:55 |
| 44. Millennial Kingdom (M31) (Bonus Track) | not rated | 0:36 |
| 45. Facing Fear / Millennium (M3 + M29) (Bonus Track) | not rated | 0:43 |
| 46. Godzilla's Theme 2000: Millennium (M34/M11) (Bonus Track) | not rated | 2:33 |
| 47. Organizer (M33) (Bonus Track) | not rated | 0:27 |
| 48. Extraterrestrial Life: The Metamorphosis (M36 Top) (Bonus Track) | not rated | 0:38 |
| 49. Astonishing Resurrection (M11) (Bonus Track) | not rated | 1:55 |
| 50. End Title - The Feared God: Godzilla (M Ending) (Bonus Track) | not rated | 4:41 |
| 51. G's Decision (M11) (Bonus Track) | not rated | 0:37 |
| 1:16:07 |
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