| CD1 |
| 1. TOHO Mark (M1) | not rated | 0:12 |
| 2. The Destruction of Birth Island (M2) | not rated | 0:25 |
| 3. Main Title (M3) | not rated | 3:13 |
| 4. Emiko Reminisces (M4) | not rated | 0:51 |
| 5. Incident At The Underwater Tunnel (M5) | not rated | 0:21 |
| 6. Godzilla Off The Coast of Taiwan (M6) | not rated | 0:26 |
| 7. Earth Inferno (M7) | not rated | 0:35 |
| 8. The Oxygen Destroyer (M9) | not rated | 0:41 |
| 9. The Hole In The Flask (M10) | not rated | 0:18 |
| 10. The Nightmare At The Aquarium (M11) | not rated | 1:06 |
| 11. Discovery of The Microorganism (M12) | not rated | 0:55 |
| 12. Godzilla Off The Coast of Okinawa (M13) | not rated | 0:31 |
| 13. The Mysterious Life Form Emerges I (M14) | not rated | 0:23 |
| 14. The Mysterious Life Form Emerges II (M16) | not rated | 2:10 |
| 15. Yukari's Crisis I (M19) | not rated | 1:36 |
| 16. Yukari's Crisis II (M20) | not rated | 0:44 |
| 17. Godzilla Appears In The Bungo Channel (M21) | not rated | 0:40 |
| 18. Super-X3 (M22) | not rated | 0:48 |
| 19. Super-X3 Preparation Sortie (M23A) | not rated | 1:07 |
| 20. Godzilla vs. The Super-X3 (M23B) | not rated | 3:04 |
| 21. Little One Was Alive (M24) | not rated | 1:25 |
| 22. Meltdown (M25) | not rated | 0:19 |
| 23. Self Defense Forces Attack Preparations (M26) | not rated | 2:04 |
| 24. Junior and Miki (M28) | not rated | 0:58 |
| 25. Junior vs. Destoroyah I (M30) | not rated | 1:08 |
| 26. Junior vs. Destoroyah II (M31) | not rated | 3:20 |
| 27. Godzilla and Junior (M33) | not rated | 1:17 |
| 28. The Super-X3 Takes Off (M15) | not rated | 1:18 |
| 29. Junior Is Captured (M36) | not rated | 1:05 |
| 30. Junior On The Verge of Death (M37) | not rated | 0:54 |
| 31. Godzilla vs. Destoroyah I (M38) | not rated | 1:10 |
| 32. Godzilla vs. Destoroyah II (M39B) | not rated | 1:25 |
| 33. Godzilla vs. Destoroyah III (M39) | not rated | 0:56 |
| 34. Godzilla vs. Destoroyah IV (M40) | not rated | 2:29 |
| 35. The Death of Junior (M41) | not rated | 1:17 |
| 36. Godzilla vs. Destoroyah V (M42) | not rated | 1:01 |
| 37. Requiem (M44 Full Size) | not rated | 3:51 |
| 38. The Birth of A New Godzilla (M44B) | not rated | 0:34 |
| 39. Ending (M45) | not rated | 2:48 |
| 49:25 |
| CD2 |
| 1. The Destruction of Birth Island (M2 CD) | not rated | 0:25 |
| 2. Main Title (M3 Edit) | not rated | 0:17 |
| 3. Main Title (M3 CD) | not rated | 3:13 |
| 4. Emiko Reminisces (M4-T1) | not rated | 0:50 |
| 5. Emiko Reminisces (M4 CD) | not rated | 0:49 |
| 6. Earth Inferno (M7 CD) | not rated | 0:35 |
| 7. The Oxygen Destroyer (M9 CD) | not rated | 0:41 |
| 8. Godzilla Advances From The Coast of Okinawa (M13 CD) | not rated | 0:28 |
| 9. The Mysterious Life Form Emerges I (M14-T1) | not rated | 0:23 |
| 10. The Mysterious Life Form Emerges I (M14-T3) | not rated | 0:23 |
| 11. Super-X3 Preparation Sortie (M23A CD) | not rated | 1:09 |
| 12. Self Defense Forces Attack Preparations (M26 CD) | not rated | 2:02 |
| 13. Junior and Miki (M28 CD) | not rated | 0:59 |
| 14. Godzilla and Junior (M33) | not rated | 1:17 |
| 15. Junior Is Captured (M36 CD) | not rated | 1:02 |
| 16. Godzilla's Theme (M39B Extra Godzilla) | not rated | 2:10 |
| 17. Destoroyah's Theme (M Destoroyah Extra) | not rated | 1:27 |
| 18. Godzilla vs. Destoroyah V (M42 CD) | not rated | 1:05 |
| 19. Shooting Down Destoroyah (M43) | not rated | 1:56 |
| 20. Requiem (M44) | not rated | 3:08 |
| 21. Ending (Keep For M45) | not rated | 2:52 |
| 22. Godzilla's Theme (M39B Extra Godzilla) | not rated | 2:10 |
| 23. Destoroyah's Appearance (M29 Cymbals for Top 4-Type) | not rated | 0:30 |
| 24. Earth Inferno (M7 Edit) | not rated | 0:35 |
| 25. The Oxygen Destroyer (M9 Edit) | not rated | 0:36 |
| 26. Godzilla Advances From The Coast of Okinawa (M13 Edit) | not rated | 0:29 |
| 27. The Mysterious Life Form Emerges II (M16 Edit) | not rated | 1:29 |
| 28. The Special Forces Mobilize (M17 Edit) | not rated | 1:11 |
| 29. Menace of The Mysterious Life Form (M18 Edit) | not rated | 0:54 |
| 30. Yukari's Crisis I (M19 Edit) | not rated | 1:14 |
| 31. Super-X3 (M22 Edit) | not rated | 0:45 |
| 32. Godzilla vs. The Super-X3 (M23B Edit) | not rated | 2:03 |
| 33. Little One Was Alive (M24 Edit) | not rated | 0:52 |
| 34. Self Defense Forces Attack Preparations (M26 Edit) | not rated | 1:10 |
| 35. Destoroyah's Birth (M27 Edit) | not rated | 1:08 |
| 36. Junior and Miki (M28 Edit) | not rated | 0:45 |
| 37. Destoroyah's Fury (M29 Edit) | not rated | 1:22 |
| 38. Junior vs. Destoroyah II (M31 Edit) | not rated | 1:38 |
| 39. Godzilla Lands / Junior vs. Destoroyah III (M32A + M32B Edit) | not rated | 0:45 |
| 40. Destoroyah's Final Form (M34 Edit) | not rated | 0:45 |
| 41. Super-X3 Sortie (M35 Edit) | not rated | 1:04 |
| 42. Junior On The Verge of Death (M37 Edit) | not rated | 0:50 |
| 43. Junior On The Verge of Death (M37 Edit) | not rated | 0:47 |
| 44. Godzilla vs. Destoroyah II and III (M38B + M39A Edit) | not rated | 2:16 |
| 45. Godzilla vs. Destoroyah IV (M40 Edit) | not rated | 1:36 |
| 46. The Death of Junior (M41 Edit) | not rated | 1:15 |
| 47. Godzilla vs. Destoroyah V (M42 Edit) | not rated | 1:00 |
| 48. Godzilla vs. Destoroyah VI (M43 Edit) | not rated | 1:21 |
| 49. Requiem (M44A Edit) | not rated | 3:06 |
| 50. The Symphony of Tokyo Bay (M8) | not rated | 0:55 |
| 1:01:42 |
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