| CD1 |
| 1. Birth of A Penguin / Main Title | not rated | 5:40 |
| 2. Penguin Spies | not rated | 1:11 |
| 3. Shadow of Doom / Clown Attack / Introducing The Bat | not rated | 5:04 |
| 4. Intro / The Zoo / The Lair | not rated | 6:02 |
| 5. Caught In The Act / Uh-Oh Max | not rated | 2:01 |
| 6. Kitty Party / Selina Transfoms | not rated | 5:32 |
| 7. Penguin's Grand Deed | not rated | 1:52 |
| 8. The List Begins | not rated | 0:47 |
| 9. The Cemetery | not rated | 2:58 |
| 10. Catwoman Saves Joan / The New Woman | not rated | 2:05 |
| 11. Penguin's Surprise | not rated | 1:45 |
| 12. Bad, Bad Dog / Batman vs. Circus / Selena's Shopping Spree | not rated | 5:44 |
| 13. Cat Chase | not rated | 2:14 |
| 14. Candidate Cobblepot | not rated | 1:01 |
| 15. The Plan / Kidnapping | not rated | 2:34 |
| 16. Sore Spots / Batman's Closet | not rated | 3:25 |
| 17. The Plot Unfolds | not rated | 1:17 |
| 18. Roof Top Encounters | not rated | 4:51 |
| 19. Batman's Wild Ride | not rated | 4:21 |
| 20. Fall From Grace | not rated | 4:19 |
| 21. Revealed / Party Crasher | not rated | 3:18 |
| 1:08:01 |
| CD2 |
| 1. Umbrella Source / The Children's Hour / War | not rated | 7:55 |
| 2. Final Confrontation / Finale | not rated | 9:18 |
| 3. A Shadow of Doubt / End Credits | not rated | 6:18 |
| 4. Face To Face | not rated | 4:24 |
| 5. The Zoo (Alternate Version) | not rated | 1:02 |
| 6. The List Begins (Alternate Version) | not rated | 0:47 |
| 7. Cat Chase (Alternate Ending) | not rated | 2:15 |
| 8. Roof Top Encounters (Original Version) | not rated | 4:51 |
| 9. Fall From Grace (Alternate Ending) | not rated | 4:20 |
| 10. The Lair (Part I) | not rated | 0:57 |
| 11. The Lair (Part II) | not rated | 4:54 |
| 12. Selina Transforms (Part I) | not rated | 1:12 |
| 13. Selina Transforms (Part II) | not rated | 4:17 |
| 14. Batman vs. Circus | not rated | 2:37 |
| 15. Cat Suite | not rated | 5:45 |
| 16. A Shadow of Doubt (Alternate Version) / End Credits (Alternate Version) | not rated | 7:08 |
| 17. Super Freak | not rated | 3:23 |
| 1:11:23 |
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