| CD1 |
| 1. 1969: We Came In Peace | not rated | 2:01 |
| 2. S.E.T.I. - Radio Signal | not rated | 1:52 |
| 3. Mysto Bridge / Satellite Collision / Destroyers Disengage / Russell Casse - Pilot | not rated | 2:16 |
| 4. First Sighting / AWAC Attack | not rated | 2:18 |
| 5. The Darkest Day | not rated | 4:13 |
| 6. Moving Day / Countdown | not rated | 2:11 |
| 7. Cancelled Leave | not rated | 1:46 |
| 8. Commence Lift-Off / Parabolic Indenwhat? | not rated | 1:17 |
| 9. Evacuation | not rated | 5:47 |
| 10. Firestorm | not rated | 1:23 |
| 11. Aftermath | not rated | 3:36 |
| 12. Base Attack | not rated | 6:12 |
| 13. Marilyn Found | not rated | 1:30 |
| 14. Area 51 / The Big Tamale / Formaldehyde Freak Show | not rated | 4:11 |
| 15. El Toro Destroyed | not rated | 1:31 |
| 16. Slimey Wakes Up | not rated | 5:23 |
| 17. Target Remains | not rated | 5:56 |
| 18. The Death of Marilyn / Dad's A Genius | not rated | 3:33 |
| 19. Alien Ship Powers Up | not rated | 1:46 |
| 20. International Code | not rated | 1:33 |
| 21. Wedding | not rated | 1:50 |
| 22. The President's Speech | not rated | 3:11 |
| 1:05:16 |
| CD2 |
| 1. Just In Case / Attacker Fires Up | not rated | 3:11 |
| 2. The Launch Tunnel / Mutha Ship / Virus Uploaded | not rated | 8:27 |
| 3. Hide! / Russell's Packin' (The Day We Fight Back) | not rated | 4:44 |
| 4. He Did It | not rated | 1:34 |
| 5. Jolly Roger | not rated | 3:17 |
| 6. Victory | not rated | 3:41 |
| 7. End Credits | not rated | 9:12 |
| 8. 1969: We Came In Peace (Alternate Version) | not rated | 2:06 |
| 9. Destroyers Disengage (Alternate Version) | not rated | 0:34 |
| 10. Cancelled Leave (Alternate Version) | not rated | 1:44 |
| 11. Commence Lift-Off (Alternate Version) | not rated | 0:55 |
| 12. Base Attack (Segment - Film Version) | not rated | 2:27 |
| 13. Marilyn Found (No Choir) | not rated | 1:29 |
| 14. Target Remains / Rescue (Alternate Version) | not rated | 2:41 |
| 15. Dad's A Genius (Alternate Version) | not rated | 0:45 |
| 16. Attacker Fires Up (Original Version) | not rated | 2:01 |
| 17. Virus Uploaded (Alternate Version) | not rated | 2:35 |
| 18. The Day We Fight Back (Original Version) | not rated | 5:49 |
| 19. Jolly Roger (Alternate Version) | not rated | 3:22 |
| 20. End Credits (Segment - No Choir) | not rated | 2:47 |
| 1:03:21 |
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