| CD1 |
| 1. Main Title | not rated | 2:00 |
| 2. The Box | not rated | 2:21 |
| 3. My Right Arm | not rated | 1:02 |
| 4. The Enterprise E Flyover | not rated | 0:33 |
| 5. Positronic Signal | not rated | 1:27 |
| 6. The Argo | not rated | 1:17 |
| 7. Odds and Ends | not rated | 4:36 |
| 8. Brothers | not rated | 1:01 |
| 9. To Romulus | not rated | 1:07 |
| 10. Arrival at Romulus | not rated | 6:25 |
| 11. Shinzon Revealed | not rated | 3:07 |
| 12. The Senate Has Doubts (film edit) | not rated | 0:33 |
| 13. Shinzon and Donatra | not rated | 1:28 |
| 14. Shinzon's Story (alternate) | not rated | 1:30 |
| 15. Ideals | not rated | 2:13 |
| 16. Theloran Discovery | not rated | 0:55 |
| 17. We're Wasting Time | not rated | 0:45 |
| 18. Violation | not rated | 0:51 |
| 19. B-4 Beams To The Scimitar | not rated | 0:45 |
| 20. Abducting Picard | not rated | 1:21 |
| 35:17 |
| CD2 |
| 1. The Mirror | not rated | 5:21 |
| 2. The Scorpion (film edit) | not rated | 2:15 |
| 3. Sins | not rated | 1:02 |
| 4. Deactivation | not rated | 1:37 |
| 5. Battle Stations | not rated | 2:40 |
| 6. Evasive Maneuvers | not rated | 2:21 |
| 7. The Hologram | not rated | 0:21 |
| 8. Our True Nature | not rated | 1:30 |
| 9. Let's Go To Work | not rated | 2:49 |
| 10. Lateral Run | not rated | 3:51 |
| 11. Hull Breach | not rated | 0:19 |
| 12. Engage | not rated | 2:10 |
| 13. Full Reverse | not rated | 1:30 |
| 14. Theloran Deployment | not rated | 2:54 |
| 15. The Corridor | not rated | 0:32 |
| 16. Final Flight | not rated | 3:46 |
| 17. Goodbye! | not rated | 0:54 |
| 18. A New Friend | not rated | 2:35 |
| 19. Repairs | not rated | 0:51 |
| 20. It's Been An Honor | not rated | 0:35 |
| 21. End Credits (film edit) | not rated | 7:46 |
| 47:39 |
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