| 1. Sealed Hyrule Castle | not rated | 1:25 |
| 2. Get Master Sword | not rated | 0:11 |
| 3. Hyrule Castle | not rated | 2:07 |
| 4. Phantom Ganon | not rated | 2:27 |
| 5. Aryll's Rescue 1 | not rated | 0:21 |
| 6. Aryll's Rescue 2 | not rated | 0:08 |
| 7. Aryll's Rescue 3 | not rated | 0:30 |
| 8. Aryll's Rescue 4 | not rated | 0:45 |
| 9. Aryll's Rescue 5 | not rated | 0:16 |
| 10. The Tower of Forsaken Fortress | not rated | 1:12 |
| 11. Helmaroc King Appears | not rated | 0:22 |
| 12. Helmaroc King | not rated | 2:30 |
| 13. Ganondorf on Forsaken Fortress | not rated | 3:55 |
| 14. The Miracle Stone Shows One's True Nature | not rated | 0:34 |
| 15. Hyrule King Appears | not rated | 1:37 |
| 16. Zelda's Awakening | not rated | 0:33 |
| 17. Princess Zelda's Theme | not rated | 0:59 |
| 18. Ballad of Gales (Baton) | not rated | 0:07 |
| 19. Ballad of Gales | not rated | 0:12 |
| 20. Fairy Spring | not rated | 1:08 |
| 21. The Fairy Queen | not rated | 0:44 |
| 22. Dungeon | not rated | 1:31 |
| 23. Earth God's Lyric (Baton) | not rated | 0:08 |
| 24. Sage Raruto | not rated | 1:14 |
| 25. Medli's Awakening | not rated | 1:43 |
| 26. Earth God's Lyric | not rated | 0:23 |
| 27. Earth Temple | not rated | 2:08 |
| 28. Jalhalla Appears | not rated | 0:22 |
| 29. Jalhalla | not rated | 1:13 |
| 30. Medli's Prayer | not rated | 0:44 |
| 31. Wind God's Aria (Baton) | not rated | 0:09 |
| 32. Sage Fodo | not rated | 1:20 |
| 33. Makar's Awakening | not rated | 0:30 |
| 34. Wind God's Aria | not rated | 0:15 |
| 35. Wind Temple | not rated | 1:48 |
| 36. Molgera Appears | not rated | 0:51 |
| 37. Molgera | not rated | 2:36 |
| 38. Makar's Prayer | not rated | 0:31 |
| 39. Hero of the Wind | not rated | 1:26 |
| 40. Ganon's Castle | not rated | 1:29 |
| 41. Gohma First Half (2nd Time) | not rated | 1:27 |
| 42. Gohma Second Half (2nd Time) | not rated | 1:12 |
| 43. Kalle Demos (2nd Time) | not rated | 1:28 |
| 44. Jalhalla (2nd Time) | not rated | 1:19 |
| 45. Molgera (2nd Time) | not rated | 2:36 |
| 46. Illusionary Room | not rated | 1:30 |
| 47. Puppet Ganon First Half | not rated | 0:56 |
| 48. Puppet Ganon (Puppet Mode) | not rated | 1:51 |
| 49. Puppet Ganon (Transformation) | not rated | 0:22 |
| 50. Puppet Ganon (Spider Mode) | not rated | 1:21 |
| 51. Puppet Ganon (Snake Mode) | not rated | 1:36 |
| 52. Puppet Ganon Second Half | not rated | 0:44 |
| 53. Ganondorf Battle First Half | not rated | 1:27 |
| 54. Ganondorf Battle | not rated | 2:23 |
| 55. Farewell Hyrule King | not rated | 2:17 |
| 56. Ending | not rated | 1:06 |
| 57. Staff Credits | not rated | 5:27 |
| 58. Epilogue | not rated | 0:56 |
| 59. Aryll's Theme | not rated | 1:37 |
| 60. Game Demo | not rated | 2:31 |
| 1:16:30 |
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