| CD1 |
| 1. Prologue: The Blackboard | not rated | 1:55 |
| 2. The Theory of Everything part 1 | not rated | 3:01 |
| 3. Patterns | not rated | 1:03 |
| 4. The Prodigy's World | not rated | 1:31 |
| 5. The Teacher's Discovery | not rated | 2:58 |
| 6. Love and Envy | not rated | 2:39 |
| 7. Progressive Waves | not rated | 3:16 |
| 8. The Gift | not rated | 2:38 |
| 9. The Eleventh Dimension | not rated | 1:46 |
| 10. Inertia | not rated | 0:45 |
| 11. The Theory of Everything part 2 | not rated | 1:50 |
| 12. The Consultation | not rated | 3:49 |
| 13. Diagnosis | not rated | 2:48 |
| 14. The Argument 1 | not rated | 0:24 |
| 15. The Rival's Dilemna | not rated | 2:22 |
| 16. Surface Tension | not rated | 0:57 |
| 17. A Reason To Live | not rated | 0:45 |
| 18. Potential | not rated | 3:14 |
| 19. Quantum Chaos | not rated | 2:09 |
| 20. Dark Medicine | not rated | 1:23 |
| 21. Alive! | not rated | 2:29 |
| 22. The Prediction | not rated | 1:05 |
| 44:58 |
| CD2 |
| 1. Fluctuations | not rated | 1:01 |
| 2. Transformation | not rated | 3:13 |
| 3. Collision | not rated | 3:26 |
| 4. Side Effects | not rated | 2:59 |
| 5. Frequency Modulation | not rated | 1:44 |
| 6. Magnetism | not rated | 3:54 |
| 7. Quid Pro Quo | not rated | 3:09 |
| 8. String Theory | not rated | 1:29 |
| 9. Fortune? | not rated | 1:36 |
| 10. Mirror Of Dreams | not rated | 2:30 |
| 11. The Lighthouse | not rated | 3:16 |
| 12. The Argument 2 | not rated | 0:49 |
| 13. The Parting | not rated | 3:27 |
| 14. The Visitation | not rated | 3:27 |
| 15. The Breakthrough | not rated | 2:00 |
| 16. The Note | not rated | 1:11 |
| 17. The Uncertainty Principle | not rated | 2:09 |
| 18. Dark Energy | not rated | 0:44 |
| 19. The Theory of Everything part 3 | not rated | 1:29 |
| 20. The Blackboard (reprise) | not rated | 1:13 |
| 44:54 |
| CD3: Instrumental versions of al |
| 1. Prologue: The Blackboard | not rated | 1:55 |
| 2. The Theory of Everything part 1 | not rated | 3:01 |
| 3. Patterns | not rated | 1:03 |
| 4. The Prodigy's World | not rated | 1:31 |
| 5. The Teacher's Discovery | not rated | 2:58 |
| 6. Love and Envy | not rated | 2:39 |
| 7. Progressive Waves | not rated | 3:16 |
| 8. The Gift | not rated | 2:38 |
| 9. The Eleventh Dimension | not rated | 1:46 |
| 10. Inertia | not rated | 0:45 |
| 11. The Theory of Everything part 2 | not rated | 1:50 |
| 12. The Consultation | not rated | 3:49 |
| 13. Diagnosis | not rated | 2:48 |
| 14. The Argument 1 | not rated | 0:24 |
| 15. The Rival's Dilemna | not rated | 2:22 |
| 16. Surface Tension | not rated | 0:57 |
| 17. A Reason To Live | not rated | 0:45 |
| 18. Potential | not rated | 3:14 |
| 19. Quantum Chaos | not rated | 2:09 |
| 20. Dark Medicine | not rated | 1:23 |
| 21. Alive! | not rated | 2:29 |
| 22. The Prediction | not rated | 1:05 |
| 44:58 |
| CD4: Instrumental versions of al |
| 1. Fluctuations | not rated | 1:01 |
| 2. Transformation | not rated | 3:13 |
| 3. Collision | not rated | 3:26 |
| 4. Side Effects | not rated | 2:59 |
| 5. Frequency Modulation | not rated | 1:44 |
| 6. Magnetism | not rated | 3:54 |
| 7. Quid Pro Quo | not rated | 3:09 |
| 8. String Theory | not rated | 1:29 |
| 9. Fortune? | not rated | 1:36 |
| 10. Mirror Of Dreams | not rated | 2:30 |
| 11. The Lighthouse | not rated | 3:16 |
| 12. The Argument 2 | not rated | 0:49 |
| 13. The Parting | not rated | 3:27 |
| 14. The Visitation | not rated | 3:27 |
| 15. The Breakthrough | not rated | 2:00 |
| 16. The Note | not rated | 1:11 |
| 17. The Uncertainty Principle | not rated | 2:09 |
| 18. Dark Energy | not rated | 0:44 |
| 19. The Theory of Everything part 3 | not rated | 1:29 |
| 20. The Blackboard (reprise) | not rated | 1:13 |
| 44:54 |
| DVD |
| 1. Feature: The Making of The Theory of Everything | not rated | 47:49 |
| 2. Full length interviews with Arjen, Cristina Scabbia, Tommy Karevik, JB, Sara Squadrani, Marco Hietala, Mike Mills, and E | not rated | 1:31:19 |
| 3. Time lapse clips of recording sessions | not rated | 12:56 |
| 2:32:04 |
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