| 1. Main Title | not rated | 1:17 |
| 2. Revered, Exalted, Wise | not rated | 0:44 |
| 3. A Fine Young Owl | not rated | 1:18 |
| 4. Flying Lessons | not rated | 1:02 |
| 5. You Have Failed Me | not rated | 0:30 |
| 6. The Truth About Otus | not rated | 1:03 |
| 7. Otus At Home | not rated | 1:06 |
| 8. Vellie (Owlboy Theme) | not rated | 2:31 |
| 9. Bomboman | not rated | 1:20 |
| 10. Mandolyn | not rated | 0:38 |
| 11. The Troublemaker | not rated | 0:58 |
| 12. Vellie Cave | not rated | 0:58 |
| 13. Separated | not rated | 2:25 |
| 14. Geddy | not rated | 0:28 |
| 15. Turtle Guardian Phase 1 | not rated | 1:21 |
| 16. Turtle Guardian Phase 2 | not rated | 1:31 |
| 17. Item Fanfare | not rated | 0:05 |
| 18. Why Is It So Dark? | not rated | 0:31 |
| 19. Sky Pirates | not rated | 1:10 |
| 20. The First Relic | not rated | 1:08 |
| 21. Tropos (Day) | not rated | 2:00 |
| 22. Tropos (Night) | not rated | 2:50 |
| 23. Buccanary's Shop | not rated | 0:51 |
| 24. Approaching The Temple | not rated | 1:07 |
| 25. Owl Temple | not rated | 2:07 |
| 26. Barb Battle | not rated | 0:56 |
| 27. Gold Coin 1 | not rated | 0:32 |
| 28. Gnome Theme | not rated | 1:04 |
| 29. Gnome Chase | not rated | 0:20 |
| 30. Game Over | not rated | 0:07 |
| 31. Who's There? | not rated | 0:27 |
| 32. Pirate Battle | not rated | 1:55 |
| 33. Alphonse's Theme | not rated | 0:21 |
| 34. You're Both To Blame For This | not rated | 1:01 |
| 35. Advent Under Attack | not rated | 2:35 |
| 36. Advent Pirate Miniboss | not rated | 1:42 |
| 37. Approaching The Dreadnought | not rated | 1:41 |
| 38. Alphonse Rescues Otus and Geddy | not rated | 1:22 |
| 39. Dreadnought Escape | not rated | 0:55 |
| 40. Molstrom Destroys Advent | not rated | 0:14 |
| 41. Created By The Owls | not rated | 1:36 |
| 42. Gold Coin 2 | not rated | 0:30 |
| 43. Flight of The Boguin | not rated | 1:04 |
| 44. Strato | not rated | 2:40 |
| 45. The Floating Continent - Jungle | not rated | 1:45 |
| 46. King Kaboon | not rated | 2:00 |
| 47. Error | not rated | 1:56 |
| 48. The Floating Continent - Lava | not rated | 2:31 |
| 49. Gold Coin 3 | not rated | 0:32 |
| 50. Guardian 2 Battle | not rated | 2:21 |
| 51. Escape From The Floating Continent | not rated | 1:29 |
| 52. Mesos | not rated | 2:17 |
| 53. History of The Owls | not rated | 2:42 |
| 54. The Lie | not rated | 1:19 |
| 55. Pirate Mothership | not rated | 2:11 |
| 56. Dirk Battle | not rated | 2:17 |
| 57. Something Isn't Right With The World | not rated | 2:07 |
| 58. Such Perfect Peace | not rated | 1:19 |
| 59. Kernelle's Rocketship | not rated | 1:00 |
| 60. Tower of The Owls | not rated | 2:40 |
| 61. The Final Ascent | not rated | 2:59 |
| 62. Ritual Incantation | not rated | 1:27 |
| 63. Solus Battle Phase 1 | not rated | 1:48 |
| 64. Solus Battle Phase 2 | not rated | 1:18 |
| 65. Solus Battle Phase 3 | not rated | 2:00 |
| 66. Anti-Hex | not rated | 1:09 |
| 67. The Loop Has Ended | not rated | 0:44 |
| 68. End Credits | not rated | 1:56 |
| 1:35:48 |
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